Package index • b3gbi

All functions

area_rarity_map() area_rarity_ts() ab_rarity_map() ab_rarity_ts(): Calculate Rarity Over Time or Space

available_indicators: Indicators Available for Use in the Package

calc_ci(): Calculate Confidence Intervals for a Biodiversity Indicator

calc_map(): Calculate Biodiversity Indicators Over Space

calc_ts(): Calculate Biodiversity Indicators Over Time

check_crs_units(): Check if a given CRS is in meters or degrees.

compute_indicator_workflow(): Calculate Biodiversity Indicators Over Space or Time

cum_richness_ts(): Calculate Cumulative Species Richness

example_cube_1: Cube of GBIF Mammal Occurrences in Denmark

example_indicator_ts1: Time Series of Observed Species Richness for Mammals in Denmark

example_indicator_ts2: Time Series of Cumulative Species Richness for Insects in Europe

get_bootstrap_ci(): Calculate confidence intervals for list of boot objects

get_observed_years(): Extract Years With Observations from an Indicator Map

hill0_map() hill0_ts() hill1_map() hill1_ts() hill2_map() hill2_ts(): Calculate Estimated Hill Diversity Over Space or Time

list_species(): Extract Species Names.

newness_map() newness_ts(): Calculate Mean Year of Occurrence Over Time or Space

obs_richness_map() obs_richness_ts(): Calculate Observed Species Richness Over Space or Time

occ_density_map() occ_density_ts(): Calculate Occurrence Density Over Space or Time

occ_turnover_ts(): Calculate Occupancy Turnover

pielou_evenness_map() pielou_evenness_ts() williams_evenness_map() williams_evenness_ts(): Calculate Evenness Over Time or Space

plot_map(): Plot Biodiversity Indicator Map

plot_species_map(): Plot Occurrence Map or Range Map of Individual Species

plot_species_ts(): Plot Occurrence Trends or Range Size Trends for Individual Species

plot_ts(): Plot Biodiversity Indicator Trend

print(<available_indicators>): Print Available Indicators

print(<indicator_map>): Print an Indicator Map Object

print(<indicator_ts>): Print an Indicator Time Series Object

print(<processed_cube>): Print a Processed Data Cube Object

print(<processed_cube_dsinfo>): Print a Processed Data Cube Object

print(<sim_cube>): Print a Simulated Data Cube Object

process_cube(): Process GBIF Data Cubes

spec_occ_map() spec_occ_ts(): Calculate Species Occurrences Over Space or Time

spec_range_map() spec_range_ts(): Plot Species Ranges Over Space or Time

tax_distinct_map() tax_distinct_ts(): Calculate Taxonomic Distinctness Over Space or Time

total_occ_map() total_occ_ts(): Calculate Total Occurrences Over Space or Time