Package index • pdindicatoR

All functions

aggregate_cube(): Aggregate datacube over grid cell to create new dataframe with species list per grid

append_ott_id(): Append ott id's to cube

calculate_faithpd(): Calculation of Faith's PD

check_completeness(): Check if provided phylogenetic tree is complete and covers all species in occurrence cube

convert_multipolygons(): Convert multisurface object to multipolygon object

generate_map_and_indicator(): Mapping PD and calculating indicator

get_pd_cube(): Find MRCA for data cube and call function to calculate PD metrics

make_shiny_maps(): Visualizing PD maps for time periods in tabs

retrieve_example_data(): Retrieve example data

taxonmatch(): Taxon matching