This function takes a processed_cube object and aggregates the
observation counts by a specified taxonomic rank.
Usage
sum_by_taxon(object, rank)
Arguments
- object
A processed_cube object containing taxonomic information
in object$data.
- rank
A character string specifying the taxonomic rank to group by
(e.g., "family", "kingdom"). This column must exist in object$data.
Value
A tibble with columns total_observations and the specified rank.
Examples
if (FALSE) { # \dontrun{
# Assuming 'cube' is a processed_cube object
family_sums <- sum_by_taxon(cube, "family")
} # }
